Human-driven impacts on marine habitats: A regional meta-analysis in the Mediterranean Sea

Habitat destruction is one of the main threats to environmental integrity. Assessing the consequences of human impacts is crucial both to predict and prevent structural and functional changes of habitats. However, to date almost all studies on marine threats, from regional to global scales, have been entirely qualitative and generally based on little more than expert opinion. We have developed a meta-analytical approach to quantify overall effects of various stressors on different Mediterranean habitat types and to compare the relative importance of different impacts across a range of habitats. We first qualitatively reviewed and synthesized 366 experiments (either manipulative or correlative) collected in the literature. After a selection procedure, we finally quantitatively meta-analyzed 158 experiments. We showed that fisheries (destructive or not), species invasion, aquaculture, sedimentation increase, water degradation and urbanization have negative effects on Mediterranean habitats and associated species assemblages. We also explored the overlap between the impacts identified as important in the Mediterranean and those identified by experts as being important globally, highlighting the inadequacies of relying on expert opinion alone. Finally, we drew attention to the critical lack of empirical knowledge about marine systems in many areas of the Mediterranean, which impedes the implementation of effective conservation measures. Our study is the first to synthesize experimental analyses on human-driven impacts on marine habitats across such a broad geographic scale.     

Regulation of integrin adhesions by varying the density of substrate-bound epidermal growth factor

Substrates coated with specific bioactive ligands are important for tissue engineering, enabling the local presentation of extracellular stimulants at controlled positions and densities. In this study, we examined the cross-talk between integrin and epidermal growth factor (EGF) receptors following their interaction with surface-immobilized Arg-Gly-Asp (RGD) and EGF ligands, respectively. Surfaces of glass coverslips, modified with biotinylated silane-polyethylene glycol, were functionalized by either biotinylated RGD or EGF (or both) via the biotin-NeutrAvidin interaction. Fluorescent labeling of the adhering A431 epidermoid carcinoma cells for zyxin or actin indicated that EGF had a dual effect on focal adhesions (FA) and stress fibers: at low concentrations (0.1; 1 ng/ml), it stimulated their growth; whereas at higher concentrations, on surfaces with low to intermediate RGD densities, it induced their disassembly, leading to cell detachment. The EGF-dependent dissociation of FAs was, however, attenuated on higher RGD density surfaces. Simultaneous stimulation by both immobilized RGD and EGF suggest a strong synergy between integrin and EGFR signaling, in FA induction and cell spreading. A critical threshold level of EGF was required to induce significant variation in cell adhesion; beyond this critical density, the immobilized molecule had a considerably stronger effect on cell adhesion than did soluble EGF. The mechanisms underlying this synergy between the adhesion ligand and EGF are discussed.     

Analysis of antibiotic residues in liquid manure and leachate of dairy farms in Northern Germany

The scientific interest in the fate of antibiotic substances in the environment has increased during the past decades. Especially in animal husbandry, the assumed quantity of antibiotics excreted has caused major concerns as the environment can be contaminated by these compounds via different paths. In this study in Northern Germany, manure and leachate samples from dairy farms were analysed in order to verify if this kind of animal husbandry can be a source of antibiotic residues found in the environment. Neither in liquid manure nor in leachate were the analysed antibiotics detected. These results clearly show the minor importance of dairy cows as sources of antibiotic residues in the aquatic environment. To explain this fact, we propose the three following reasons: (i) the amount of antibiotics administered in dairy farming is low compared to pig or poultry production; (ii) manure storage is a useful process to minimize the antibiotic residues as the substances applied to dairy cows are sensitive to degradation processes during that period; (iii) excreted directly on grasslands, the substances degrade very quickly or adsorb to soil and are therefore not present in the leachate.     

Commercial forest fertilization causes long-term residual effects in ground vegetation of boreal forests

Due to an increasing demand of forestry products, nitrogen (N) fertilization of coniferous forests may in the future become a standard silvicultural practice in parts of the boreal region that is not too remotely situated. Beside positive effects on productivity, forest fertilization may induce changes in species composition of the ground vegetation. More information on the magnitude of such side effects is needed to evaluate whether commercial forest fertilization is in accordance with principles of sustainable forestry and preservation of biodiversity.     

Ethnobotanical knowledge of Philippine lowland farmers and its application in agroforestry

Complex agroforestry systems that mimic local forest structure, so-called ‘analogs’, are assumed to be of specific value to rural people as well as the environment. The objective of this study was to document and evaluate the utilization of plant resources by Philippine lowland farmers to identify native species suitable for integration in such a system. The interviewed farmers maintain a comprehensive ethnobotanical knowledge. They reported using 122 plant species for 77 purposes. Eighty species have medicinal value, 35 provide food, and 32 serve other uses. About 64% of the identified species are Philippine natives. The life form composition of these species is dominated by trees but also includes herbs, lianas, and graminoids, thus providing the structural elements required in analog systems. Nevertheless, only a few of the species seem to be promising for cultivation. Many of them are ubiquitous in the vicinity of villages. Some species are also not much appreciated but act as staple food only during food shortage. Even though several of the species have proven market value, such as rattan (e.g. Calamus merrillii), or are reputed medicines, such as ‘Philippine ginseng’ (Sarcandra glabra), no cultivation could be observed. This shows that usefulness in itself cannot be the only criterion to promote species but that it requires a careful analysis of the marketability of the respective species. In this context we suggest the following three species that are of proven medicinal value for in-depth study: the liana Tinospora crispa (Menispermaceae), the tree Picrasma javanica (Simaroubaceae), and the herb Sarcandra glabra (Chloranthaceae). They represent three different life form strategies and would thus fit well in vertically structured agroforestry systems.     

Antimicrobial peptides and proteins of the horse - insights into a well-armed organism

ABSTRACT: Antimicrobial peptides play a pivotal role as key effectors of the innate immune system in plants and animals and act as endogenous antibiotics. The molecules exhibit an antimicrobial activity against bacteria, viruses, and eukaryotic pathogens with different specificities and potencies depending on the structure and amino-acid composition of the peptides. Several antimicrobial peptides were comprehensively investigated in the last three decades and some molecules with remarkable antimicrobial properties have reached the third phase of clinical studies. Next to the peptides themselves, numerous organisms were examined and analyzed regarding their repertoire of antimicrobial peptides revealing a huge number of candidates with potencies and properties for future medical applications. One of these organisms is the horse, which possesses numerous peptides that are interesting candidates for therapeutical applications in veterinary medicine. Here we summarize investigations and knowledge on equine antimicrobial peptides, point to interesting candidates, and discuss prospects for therapeutical applications.     

Screen of Genes Linked to High-Sugar Content in Stems by Comparative Genomics

One of the great advantages of the fully sequenced rice genome is to serve as a reference for other cereal genomes in particular for identifying genes linked to unique traits. A trait of great interest is reduced lignocellulose in the stem of related species in favor of fermentable sugars as a source of biofuels. While sugarcane is one of the most efficient biofuel crops, little is known about the underlying gene repertoire involved in it. Here, we take advantage of the natural variation of sweet and grain sorghum to uncover genes that are conserved in rice, sorghum, and sugarcane but differently expressed in sweet versus grain sorghum by using a microarray platform and the syntenous alignment of rice and sorghum genomic regions containing these genes. Indeed, enzymes involved in carbohydrate accumulation and those that reduce lignocellulose can be identified.     

Development of new real-time PCR methods for detection of Decapod iridescent virus 1 in shrimp

Novel Decapod Iridescent virus (DIV1) infections emerged in mainland China around 2014 and have devastated shrimp aquaculture operations in Chinese coastal provinces. In 2020, DIV1 has spread to Taiwan with devastating results to shrimp and crayfish farms, in addition to being found in wild caught Penaeus monodon from the Indian Ocean. This trend is a major cause for concern and an urgent reminder to expand the tools needed to monitor the spread of DIV1 globally. Here, we describe a set of four different real-time polymerase chain reaction (PCR) assays positioned across the genome of DIV1 to detect the virus in shrimp tissues. All four assays show a wide dynamic range and high analytical sensitivity and specificity. In addition, the newly developed assays show excellent diagnostic sensitivity and specificity in clinical Litopenaeus vannamei samples of North Asian origin. The new molecular toolset will enhance global capabilities to monitor the spread of DIV1 and ultimately be used as an early warning system for farmers and authorities to engage in appropriate risk mitigation strategies.     

Assessing spillover from marine protected areas and its drivers: A meta‐analytical approach

Overfishing may seriously impact fish populations and ecosystems. Marine protected areas (MPAs) are key tools for biodiversity conservation and fisheries management, yet the fisheries benefits remain debateable. Many MPAs include a fully protected area (FPA), restricting all activities, within a partially protected area (PPA) where potentially sustainable activities are permitted. An effective tool for biodiversity conservation, FPAs, can sustain local fisheries via spillover, that is the outward export of individuals from FPAs. Spillover refers to both: “ecological spillover”: outward net emigration of juveniles, subadults and/or adults from the FPA; and “fishery spillover”: the fraction of ecological spillover that directly benefits fishery yields and revenues through fishable biomass. Yet, how common is spillover remains controversial. We present a meta‐analysis of a unique global database covering 23 FPAs worldwide, using published literature and purposely collected field data, to assess the capacity of FPAs to export biomass and whether this response was mediated by specific FPA features (e.g. size, age) or species characteristics (e.g. mobility, economic value). Results show fish biomass and abundance outside FPAs was higher: (a) in locations close to FPA borders (<200 m) than further away (>200 m); (b) for species with a high commercial value; and (c) in the presence of PPA surrounding the FPA. Spillover was slightly higher in FPAs that were larger and older and for more mobile species. Based on the broadest data set compiled to date on marine species ecological spillover beyond FPAs' borders, our work highlights elements that could guide strategies to enhance local fishery management using MPAs.     

Substrate composition determines emergence success and development of European nase larvae (Chondrostoma nasus L.)

European nase (Chondrostoma nasus) is a specialist riverine fish, characterised by a complex life cycle making it vulnerable to habitat degradation. Recent findings indicate that, analogously to salmonids, the interstitial zone quality may pose a serious bottleneck for successful recruitment of this species. In this study, nase eggs were exposed to different substrate qualities. First, standardised substrate mixtures with differing fine sediment additions were used. Second, we tested different homogenous gravel fractions for their influence on egg development and emergence success. In both setups, substrate composition significantly affected emergence success, timing of emergence and larvae size at emergence. In the substrate mixtures, emergence was most successful in substratum with no fine sediment addition (98%) and decreased to 55% in substratum with 20% fine sediment addition. Emergence was most successful in the coarsest fraction (93%) and decreased to 47% in the finest fraction. Over all treatments, the time between hatching and emergence from substrate differed by up to 156 degree days, thereby indicating that free embryos of nase use the shelter of the interstitial zone for early ontogeny. These results suggest that a loose and porous stream bed can positively contribute to the development success of eggs and larvae and thereby potentially improve the recruitment of nase populations. It is thus important to consider the substrate and interstitial conditions in the conservation and restoration management of this rheophilic cyprinid.